PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024067-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 570aa    MW: 63573.1 Da    PI: 6.7394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024067-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019458479223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     C+ Cg++F +k ++++H+++ H
  NNU_024067-RA 458 HCERCGRTF-QKAEMEKHMKVfH 479
                    5********.**********988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031521.3E-4790260IPR004854Ubiquitin fusion degradation protein UFD1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDFELRGARE KLEREQKEGK ERARLRLQKE RKAKQEAIRQ REAIEAAQRI RRLDAAEAQL  60
KANQQMEESM LAGKGVILFR ILEAVPYQGY GDKIKLPPSC FTELSDQGAL DKGPMYFQLS  120
KVQQDGSPTT ESTEQQNHGT THSGVLEFTT NEGFVELPPH VWNNLFSSEP PSTPLIEVRY  180
VRLPKGTYAK LQPDGMGFLD MPNHKAVLET SLRQHATLSQ GDVVTVNHGE LSYKLRVLEL  240
KPSSSVSVLE TDIEVDIVGP DLASGRADQH VLVPLTLGKA ESGIVKEGKY NYYKFTVDTD  300
VSEKIASGFA NIEVRIEAET SSGDTDLYVS KHPVIFPNQH QHEWSSHDVG SKVLFLGSKD  360
ENLGAGTYSI GVFGFKGTTK YQIVVGIEDN NSLKVGEQAA ASSSKLDSDS LACRNCKHYI  420
PSRSIALHEA YCFRHNVICQ HAGCGIVLRK EEAENHMHCE RCGRTFQKAE MEKHMKVFHE  480
PLHCPCGVIL EKEEMVHHQS TVCPLRLITC QFCGDMVQAG TSATDIRDRL RGLSEHESVC  540
GSRTALCDSC GRSVMLKEMD IHRIAVHQKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yuj_A4e-289125740188Ubiquitin fusion degradation 1-like
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244126.10.0PREDICTED: uncharacterized protein LOC104588031
TrEMBLF6HID70.0F6HID7_VITVI; Putative uncharacterized protein
STRINGVIT_12s0059g01100.t010.0(Vitis vinifera)